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Ace::Graphics::Glyph::UsereContributed Perl DAce::Graphics::Glyph::segments(3)

NAME
       Ace::Graphics::Glyph::segments - The "discontinuous segments" glyph

SYNOPSIS
	 See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.

DESCRIPTION
       This glyph draws a sequence feature that consists of multiple
       discontinuous segments, such as the exons on a transcript or a gapped
       alignment.  The representation is a series of filled rectangles
       connected by line segments.

       The features passed to it must either respond to the
       Bio::SequenceFeatureI-style subSeqFeatures() method, or the
       AcePerl/Das-style segments() or merged_segments() methods.

   OPTIONS
       In addition to the common options, this glyph recognizes the
       b<-stranded> argument.  If b<-stranded> is true and the feature is an
       alignment (has the target() method) then the glyph will draw little
       arrows in the segment boxes to indicate the direction of the alignment.

BUGS
       Please report them.

SEE ALSO
       Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel,
       Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow,
       Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box,
       Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments,
       Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,

AUTHOR
       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.14.1			  2001-09-17 Ace::Graphics::Glyph::segments(3)

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