Bio::DB::Sam::Constants man page on Pidora

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Bio::DB::Sam::ConstantUser Contributed Perl DocumentBio::DB::Sam::Constants(3)

NAME
       Bio::DB::Sam::Constants -- Constants for use with SAM/BAM

SYNOPSIS
	use Bio::DB::Sam::Constants;
	my $pad_flag = BAM_CPAD;

DESCRIPTION
       This module exports several constants for use with the SAM/BAM module.
       See the SAM documentation for their interpretation.

       Cigar operations
	     BAM_CIGAR_SHIFT
	     BAM_CIGAR_MASK
	     BAM_CMATCH
	     BAM_CINS
	     BAM_CDEL
	     BAM_CREF_SKIP
	     BAM_CSOFT_CLIP
	     BAM_CHARD_CLIP
	     BAM_CPAD

       FLAGS
	   A hashref that maps flag values to human-readable names. For
	   example:

	    FLAGS->{0x0008} == 'M_UNMAPPED'

       RFLAGS
	   The reverse of FLAGS:

	    FLAGS->{M_UNMAPPED} == 0x0008

SEE ALSO
       Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Alignment

AUTHOR
       Lincoln Stein <lincoln.stein@oicr.on.ca>.  <lincoln.stein@bmail.com>

       Copyright (c) 2009 Ontario Institute for Cancer Research.

       This package and its accompanying libraries is free software; you can
       redistribute it and/or modify it under the terms of the GPL (either
       version 1, or at your option, any later version) or the Artistic
       License 2.0.  Refer to LICENSE for the full license text. In addition,
       please see DISCLAIMER.txt for disclaimers of warranty.

perl v5.14.2			  2012-08-23	    Bio::DB::Sam::Constants(3)
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