Bio::LiveSeq::TranslatUser3Contributed Perl DocumeBio::LiveSeq::Translation(3)NAMEBio::LiveSeq::Translation - Translation class for LiveSeq
SYNOPSIS
#documentation needed
DESCRIPTION
This stores informations about aminoacids translations of transcripts.
The implementation is that a Translation object is the translation of a
Transcript object, with different possibilities of manipulation,
different coordinate system and eventually its own ranges (protein
domains).
AUTHOR - Joseph A.L. Insana
Email: Insana@ebi.ac.uk, jinsana@gmx.net
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr);
Function: generates a new Bio::LiveSeq::Translation
Returns : reference to a new object of class Translation
Errorcode -1
Args : reference to an object of class Transcript
get_Transcript
Title : valid
Usage : $transcript = $obj->get_Transcript()
Function: retrieves the reference to the object of class Transcript (if any)
attached to a LiveSeq object
Returns : object reference
Args : none
aa_ranges
Title : aa_ranges
Usage : @proteinfeatures = $translation->aa_ranges()
Function: to retrieve all the LiveSeq AARange objects attached to a
Translation, usually created out of a SwissProt database entry
crossreferenced from an EMBL CDS feature.
Returns : an array
Args : none
perl v5.14.1 2011-07-22 Bio::LiveSeq::Translation(3)
