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Bio::MapIO::mapmaker(3User Contributed Perl DocumentatiBio::MapIO::mapmaker(3)
NAME
Bio::MapIO::mapmaker - A Mapmaker Map reader
SYNOPSIS
# do not use this object directly it is accessed through the Bio::MapIO
system
use Bio::MapIO;
my $mapio = Bio::MapIO->new(-format => "mapmaker",
-file => "mapfile.map");
while ( my $map = $mapio->next_map ) { # get each map
foreach my $marker ( $map->each_element ) {
# loop through the markers associated with the map
}
}
DESCRIPTION
This object contains code for parsing and processing Mapmaker output
and creating Bio::Map::MapI objects from it.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
next_map
Title : next_map
Usage : my $map = $factory->next_map;
Function: Get one or more map objects from the Mapmaker input
Returns : Bio::Map::MapI
Args : none
See Bio::Map::MapI
write_map
Title : write_map
Usage : $factory->write_map($map);
Function: Write a map out through the factory
Returns : none
Args : Bio::Map::MapI
perl v5.14.1 2011-07-22 Bio::MapIO::mapmaker(3)
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