Bio::Matrix::PSM::IO::UserlContributed Perl DBio::Matrix::PSM::IO::psiblast(3)NAMEBio::Matrix::PSM::IO::psiblast - PSM psiblast parser
SYNOPSIS
See Bio::Matrix::PSM::IO for documentation
DESCRIPTION
Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST
distribution).
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - James Thompson
Email tex@biosysadmin.com
APPENDIX
new
Title : new
Usage : my $psmIO = Bio::Matrix::PSM::IO->new(-format=>'psiblast',
-file=>$file);
Function: Associates a file with the appropriate parser
Throws :
Example :
Args :
Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);
next_psm
Title : next_psm
Usage : my $psm = $psmIO->next_psm();
Function: Reads the next PSM from the input file, associated with this object
Throws : None
Returns : Bio::Matrix::PSM::ProtPsm object
Args : none
perl v5.14.1 2011-07-22 Bio::Matrix::PSM::IO::psiblast(3)
