Bio::Search::Hit::FastUser Contributed Perl DocumentBio::Search::Hit::Fasta(3)NAMEBio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
SYNOPSIS
# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
DESCRIPTION
Bio::Search::Hit::HitI objects are data structures that contain
information about specific hits obtained during a library search. Some
information will be algorithm-specific, but others will be generally
defined, such as the ability to obtain alignment objects corresponding
to each hit.
SEE ALSO
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit,
Bio::SearchIO::fasta.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much
appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Aaron Mackey
Email amackey-at-virginia.edu
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
_initialize
Function: where the heavy stuff will happen when new is called
AUTOLOAD
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
perl v5.14.1 2011-07-22 Bio::Search::Hit::Fasta(3)
