Bio::Seq::SeqFastaSpeeUsertContributed Perl DBio::Seq::SeqFastaSpeedFactory(3)NAMEBio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI
(or derived class) through a factory
SYNOPSIS
use Bio::Seq::SeqFastaSpeedFactory;
my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create(-seq => 'WYRAVLC',
-id => 'name');
# If you want the factory to create Bio::Seq objects instead
# of the default Bio::PrimarySeq objects, use the -type parameter:
my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
DESCRIPTION
This object will build Bio::Seq objects generically.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object
Returns : Bio::Seq::SeqFastaSpeedFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates a new Bio::Seq object, correctly built but very
fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
Returns : Bio::Seq
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-id => $name
perl v5.14.1 2011-07-22 Bio::Seq::SeqFastaSpeedFactory(3)
