Bio::SeqIO::MultiFile(User Contributed Perl DocumentatBio::SeqIO::MultiFile(3)NAMEBio::SeqIO::MultiFile - Treating a set of files as a single input
stream
SYNOPSIS
$seqin = Bio::SeqIO::MultiFile( '-format' => 'Fasta',
'-files' => ['file1','file2'] );
while((my $seq = $seqin->next_seq)) {
# do something with $seq
}
DESCRIPTIONBio::SeqIO::MultiFile provides a simple way of bundling a whole set of
identically formatted sequence input files as a single stream.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Ewan Birney
Email birney@ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage :
Function:
Example :
Returns :
Args :
next_primary_seq
Title : next_primary_seq
Usage :
Function:
Example :
Returns :
Args :
_load_file
Title : _load_file
Usage :
Function:
Example :
Returns :
Args :
_set_file
Title : _set_file
Usage :
Function:
Example :
Returns :
Args :
_current_seqio
Title : _current_seqio
Usage : $obj->_current_seqio($newval)
Function:
Example :
Returns : value of _current_seqio
Args : newvalue (optional)
_format
Title : _format
Usage : $obj->_format($newval)
Function:
Example :
Returns : value of _format
Args : newvalue (optional)
perl v5.14.1 2011-07-22 Bio::SeqIO::MultiFile(3)
