Bio::SeqIO::pir man page on Fedora

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Bio::SeqIO::pir(3)    User Contributed Perl Documentation   Bio::SeqIO::pir(3)

NAME
       Bio::SeqIO::pir - PIR sequence input/output stream

SYNOPSIS
       Do not use this module directly.	 Use it via the Bio::SeqIO class.

DESCRIPTION
       This object can transform Bio::Seq objects to and from pir flat file
       databases.

       Note: This does not completely preserve the PIR format - quality
       information about sequence is currently discarded since bioperl does
       not have a mechanism for handling these encodings in sequence data.

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs and their resolution.  Bug reports can be submitted via the
       web:

	 http://bugzilla.open-bio.org/

AUTHORS
       Aaron Mackey <amackey@virginia.edu> Lincoln Stein <lstein@cshl.org>
       Jason Stajich <jason@bioperl.org>

APPENDIX
       The rest of the documentation details each of the object methods.
       Internal methods are usually preceded with a _

   next_seq
	Title	: next_seq
	Usage	: $seq = $stream->next_seq()
	Function: returns the next sequence in the stream
	Returns : Bio::Seq object
	Args	: NONE

   write_seq
	Title	: write_seq
	Usage	: $stream->write_seq(@seq)
	Function: writes the $seq object into the stream
	Returns : 1 for success and 0 for error
	Args	: Array of Bio::PrimarySeqI objects

perl v5.14.1			  2011-07-22		    Bio::SeqIO::pir(3)
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