BP_DBSPLIT(1) User Contributed Perl Documentation BP_DBSPLIT(1)NAME
bp_dbsplit - script to split an input set of database(s) into smaller
pieces
SYNOPSIS
bp_dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
[--prefix outputprefix] [ < file1 file 2 OR file1 file2]
DESCRIPTION
This script will take as input a list of filenames or a single file or
from STDIN a sequence database and split the database into separate
files of X numbers of sequences. You specify X with the "--size/-s"
parameter. The input and output sequence format is any that is
supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
You can specify the input data either as a single file with -i
filename, or as a single file as an argument like
% bp_dbsplit file1 file2
or as a list of sequence data with
% cat file1 file2 file3 | bp_dbsplit
You'll want to use the "--prefix" to specify what the output prefix
will be.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via the
web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.20.2 2015-09-15 BP_DBSPLIT(1)
