contig_draw.pl man page on DragonFly

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CONTIG_DRAW(1)	      User Contributed Perl Documentation	CONTIG_DRAW(1)

NAME
       search_overview -- Render a SearchIO parser report into a simple
       overview graphic

SYNOPSIS
       search_overview -i filename [-f format] [-o outputfilename] [--labels]

DESCRIPTION
       This script will take any Bio::SearchIO parseable report and turn it
       into a simple overview graphic of the report.  For our purposes we are
       assuming BLAST and the BLAST scores when assigning colors.  Output is a
       PNG format file.

       This is not intended to be an overly customized script, rather it
       should probably just be either a quick and dirty look at a report or a
       starting point for more complicated implementations.

       The color is determined by the hit score which is currently pegged to
       the NCBI scheme which looks like this

	RED	E<gt>= 200
	PURPLE	80-200
	GREEN	50-80
	BLUE	40-50
	BLACK	E<lt>40

       Options:
	-i/--input	  The input filename, otherwise input is assumed from
       STDIN  -o/--output	The output filename, this is optional, if you
       do not
			  provide the output filename the script will create a
       file
			  using the name of the query sequence and will
       process
			  all the sequences in the file.  If an output
       filename
			  IS provided the script will only display an image
       for the
			  first one.
	-f/--format	  The SearchIO format parser to use, if not provided
			  SearchIO will guess based on the file extension.
	-l/--labels	  Display the hit sequence name as a label in the
       overview.
			  For lots of sequences this will make the image very
       long
			  so by default it is turned off.

AUTHOR Jason Stajich
       Jason Stajich, jason[-at-]open-bio[-dot-]org.

perl v5.20.2			  2015-09-16			CONTIG_DRAW(1)
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