Core(3) User Contributed Perl Documentation Core(3)NAMEPDL::Core - fundamental PDL functionality
DESCRIPTION
Methods and functions for type conversions, PDL creation, type
conversion, threading etc.
SYNOPSIS
use PDL::Core; # Normal routines
use PDL::Core ':Internal'; # Hairy routines
FUNCTIONS
pdl
piddle constructor - creates new piddle from perl scalars/arrays and
piddles
$a = pdl(SCALAR|ARRAY REFERENCE|ARRAY);
$a = pdl [1..10]; # 1D array
$a = pdl ([1..10]); # 1D array
$a = pdl (1,2,3,4); # Ditto
$b = pdl [[1,2,3],[4,5,6]]; # 2D 3x2 array
$b = pdl 42 # 0-dimensional scalar
$c = pdl $a; # Make a new copy
$a = pdl([1,2,3],[4,5,6]); # 2D
$a = pdl([[1,2,3],[4,5,6]]); # 2D
Note the last two are equivalent - a list is automatically converted to
a list reference for syntactic convenience. i.e. you can omit the outer
"[]"
You can mix and match arrays, array refs, and PDLs in your argument
list, and "pdl" will sort them out. You get back a PDL whose last
(slowest running) dim runs across the top level of the list you hand
in, and whose first (fastest running) dim runs across the deepest level
that you supply.
Throwing a PDL into the mix has the same effect as throwing in a list
ref:
pdl(pdl(1,2),[3,4])
is the same as
pdl([1,2],[3,4]).
All of the dimensions in the list are "padded-out" with undefval to
meet the widest dim in the list, so (e.g.)
$a = pdl([[1,2,3],[2]])
gives you the same answer as
$a = pdl([[1,2,3],[2,undef,undef]]);
"pdl()" is a functional synonym for the 'new' constructor, e.g.:
$x = new PDL [1..10];
In order to control how undefs are handled in converting from perl
lists to PDLs, one can set the variable $PDL::undefval. For example:
$foo = [[1,2,undef],[undef,3,4]];
$PDL::undefval = -999;
$f = pdl $foo;
print $f
[
[ 1 2 -999]
[-999 3 4]
]
$PDL::undefval defaults to zero.
null
Returns a 'null' piddle.
$x = null;
"null()" has a special meaning to PDL::PP. It is used to flag a special
kind of empty piddle, which can grow to appropriate dimensions to store
a result (as opposed to storing a result in an existing piddle).
perldl> sumover sequence(10,10), $ans=null;p $ans
[45 145 245 345 445 545 645 745 845 945]
nullcreate
Returns a 'null' piddle.
$x = PDL->nullcreate($arg)
This is an routine used by many of the threading primitives (i.e.
sumover, minimum, etc.) to generate a null piddle for the function's
output that will behave properly for derived (or subclassed) PDL
objects.
For the above usage: If $arg is a PDL, or a derived PDL, then
"$arg->null" is returned. If $arg is a scalar (i.e. a zero-dimensional
PDL) then "$PDL->null" is returned.
PDL::Derived->nullcreate(10)
returns PDL::Derived->null.
PDL->nullcreate($pdlderived)
returns $pdlderived->null.
nelem
Return the number of elements in a piddle
$n = nelem($piddle); $n = $piddle->nelem;
$mean = sum($data)/nelem($data);
dims
Return piddle dimensions as a perl list
@dims = $piddle->dims; @dims = dims($piddle);
perldl> p @tmp = dims zeroes 10,3,22
10 3 22
ndims
Returns the number of dimensions in a piddle. Alias for getndims.
getndims
Returns the number of dimensions in a piddle
$ndims = $piddle->getndims;
perldl> p zeroes(10,3,22)->getndims
3
dim
Returns the size of the given dimension of a piddle. Alias for getdim.
getdim
Returns the size of the given dimension.
$dim0 = $piddle->getdim(0);
perldl> p zeroes(10,3,22)->getdim(1)
3
Negative indices count from the end of the dims array. Indices beyond
the end will return a size of 1. This reflects the idea that any pdl is
equivalent to an infinitely dimensional array in which only a finite
number of dimensions have a size different from one. For example, in
that sense a 3D piddle of shape [3,5,2] is equivalent to a
[3,5,2,1,1,1,1,1,....] piddle. Accordingly,
print $a->getdim(10000);
will print 1 for most practically encountered piddles.
topdl
alternate piddle constructor - ensures arg is a piddle
$a = topdl(SCALAR|ARRAY REFERENCE|ARRAY);
The difference between pdl() and "topdl()" is that the latter will just
'fall through' if the argument is already a piddle. It will return a
reference and NOT a new copy.
This is particulary useful if you are writing a function which is doing
some fiddling with internals and assumes a piddle argument (e.g. for
method calls). Using "topdl()" will ensure nothing breaks if passed
with '2'.
Note that "topdl()" is not exported by default (see example below for
usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
$a = topdl 43; # $a is piddle with value '43'
$b = topdl $piddle; # fall through
$a = topdl (1,2,3,4); # Convert 1D array
PDL::get_datatype
Internal: Return the numeric value identifying the piddle datatype
$x = $piddle->get_datatype;
Mainly used for internal routines.
NOTE: get_datatype returns 'just a number' not any special type object,
unlike type.
howbig
Returns the size of a piddle datatype in bytes.
Note that "howbig()" is not exported by default (see example below for
usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
$size = howbig($piddle->get_datatype);
Mainly used for internal routines.
NOTE: NOT a method! This is because get_datatype returns 'just a
number' not any special object.
perldl> p howbig(ushort([1..10])->get_datatype)
2
get_dataref
Return the internal data for a piddle, as a perl SCALAR ref.
Most piddles hold their internal data in a packed perl string, to take
advantage of perl's memory management. This gives you direct access to
the string, which is handy when you need to manipulate the binary data
directly (e.g. for file I/O). If you modify the string, you'll need to
call upd_data afterward, to make sure that the piddle points to the new
location of the underlying perl variable.
You shouldn't mess with the SV unless you've called make_physical or
something similar. You definitely don't want to do anything to the SV
to truncate or deallocate the string, unless you correspondingly call
reshape to make the PDL match its new data dimension.
You definitely don't want to use get_dataref unless you know what you
are doing (or are trying to find out): you can end up scrozzling memory
if you shrink or eliminate the string representation of the variable.
Here be dragons.
upd_data
Update the data pointer in a piddle to match its perl SV.
This is useful if you've been monkeying with the packed string
representation of the PDL, which you probably shouldn't be doing
anyway. (see get_dataref.)
PDL::threadids
Returns the piddle thread IDs as a perl list
Note that "threadids()" is not exported by default (see example below
for usage).
use PDL::Core ':Internal'; # use the internal routines of
# the Core module
@ids = threadids $piddle;
doflow
Turn on/off dataflow
$x->doflow; doflow($x);
flows
Whether or not a piddle is indulging in dataflow
something if $x->flows; $hmm = flows($x);
PDL::new
new piddle constructor method
$x = PDL->new(SCALAR|ARRAY|ARRAY REF);
$x = PDL->new(42);
$y = new PDL [1..10];
Constructs piddle from perl numbers and lists.
copy
Make a physical copy of a piddle
$new = $old->copy;
Since "$new = $old" just makes a new reference, the "copy" method is
provided to allow real independent copies to be made.
PDL::hdr_copy
Return an explicit copy of the header of a PDL.
hdr_copy is just a wrapper for the internal routine _hdr_copy, which
takes the hash ref itself. That is the routine which is used to make
copies of the header during normal operations if the hdrcpy() flag of a
PDL is set.
General-purpose deep copies are expensive in perl, so some simple
optimization happens:
If the header is a tied array or a blessed hash ref with an associated
method called "copy", then that ->copy method is called. Otherwise,
all elements of the hash are explicitly copied. References are
recursively deep copied.
This routine seems to leak memory.
PDL::unwind
Return a piddle which is the same as the argument except that all
threadids have been removed.
$y = $x->unwind;
PDL::make_physical
Make sure the data portion of a piddle can be accessed from XS code.
$a->make_physical;
$a->call_my_xs_method;
Ensures that a piddle gets its own allocated copy of data. This
obviously implies that there are certain piddles which do not have
their own data. These are so called virtual piddles that make use of
the vaffine optimisation (see PDL::Indexing). They do not have their
own copy of data but instead store only access information to some (or
all) of another piddle's data.
Note: this function should not be used unless absolutely neccessary
since otherwise memory requirements might be severly increased. Instead
of writing your own XS code with the need to call "make_physical" you
might want to consider using the PDL preprocessor (see PDL::PP) which
can be used to transparently access virtual piddles without the need to
physicalise them (though there are exceptions).
dummy
Insert a 'dummy dimension' of given length (defaults to 1)
No relation to the 'Dungeon Dimensions' in Discworld!
Negative positions specify relative to last dimension, i.e. "dummy(-1)"
appends one dimension at end, "dummy(-2)" inserts a dummy dimension in
front of the last dim, etc.
If you specify a dimension position larger than the existing dimension
list of your PDL, the PDL gets automagically padded with extra dummy
dimensions so that you get the dim you asked for, in the slot you asked
for. This could cause you trouble if, for example, you ask for
$a->dummy(5000,1) because $a will get 5,000 dimensions, each of rank 1.
Because padding at the beginning of the dimension list moves existing
dimensions from slot to slot, it's considered unsafe, so automagic
padding doesn't work for large negative indices -- only for large
positive indices.
$y = $x->dummy($position[,$dimsize]);
perldl> p sequence(3)->dummy(0,3)
[
[0 0 0]
[1 1 1]
[2 2 2]
]
perldl> p sequence(3)->dummy(3,2)
[
[
[0 1 2]
]
[
[0 1 2]
]
]
perldl> p sequence(3)->dummy(-3,2)
For safety, <pos> < -(dims+1) is not allowed in dummy, allowed min=-2.
clump
"clumps" several dimensions into one large dimension
If called with one argument $n clumps the first $n dimensions into one.
For example, if $a has dimensions "(5,3,4)" then after
$b = $a->clump(2); # Clump 2 first dimensions
the variable $b will have dimensions "(15,4)" and the element
"$b->at(7,3)" refers to the element "$a->at(1,2,3)".
Use "clump(-1)" to flatten a piddle. The method flat is provided as a
convenient alias.
Clumping with a negative dimension in general leaves that many
dimensions behind -- e.g. clump(-2) clumps all of the first few
dimensions into a single one, leaving a 2-D piddle.
If "clump" is called with an index list with more than one element it
is treated as a list of dimensions that should be clumped together into
one. The resulting clumped dim is placed at the position of the lowest
index in the list. This convention ensures that "clump" does the
expected thing in the usual cases. The following example demonstrates
typical usage:
$a = sequence 2,3,3,3,5; # 5D piddle
$c = $a->clump(1..3); # clump all the dims 1 to 3 into one
print $c->info; # resulting 3D piddle has clumped dim at pos 1
PDL: Double D [2,27,5]
thread_define
define functions that support threading at the perl level
thread_define 'tline(a(n);b(n))', over {
line $_[0], $_[1]; # make line compliant with threading
};
"thread_define" provides some support for threading (see PDL::Indexing)
at the perl level. It allows you to do things for which you normally
would have resorted to PDL::PP (see PDL::PP); however, it is most
useful to wrap existing perl functions so that the new routine supports
PDL threading.
"thread_define" is used to define new threading aware functions. Its
first argument is a symbolic repesentation of the new function to be
defined. The string is composed of the name of the new function
followed by its signature (see PDL::Indexing and PDL::PP) in
parentheses. The second argument is a subroutine that will be called
with the slices of the actual runtime arguments as specified by its
signature. Correct dimension sizes and minimal number of dimensions for
all arguments will be checked (assuming the rules of PDL threading, see
PDL::Indexing).
The actual work is done by the "signature" class which parses the
signature string, does runtime dimension checks and the routine
"threadover" that generates the loop over all appropriate slices of pdl
arguments and creates pdls as needed.
Similar to "pp_def" and its "OtherPars" option it is possible to define
the new function so that it accepts normal perl args as well as
piddles. You do this by using the "NOtherPars" parameter in the
signature. The number of "NOtherPars" specified will be passed
unaltered into the subroutine given as the second argument of
"thread_define". Let's illustrate this with an example:
PDL::thread_define 'triangles(inda();indb();indc()), NOtherPars => 2',
PDL::over {
${$_[3]} .= $_[4].join(',',map {$_->at} @_[0..2]).",-1,\n";
};
This defines a function "triangles" that takes 3 piddles as input plus
2 arguments which are passed into the routine unaltered. This routine
is used to collect lists of indices into a perl scalar that is passed
by reference. Each line is preceded by a prefix passed as $_[4]. Here
is typical usage:
$txt = '';
triangles(pdl(1,2,3),pdl(1),pdl(0),\$txt," "x10);
print $txt;
resulting in the following output
1,1,0,-1,
2,1,0,-1,
3,1,0,-1,
which is used in PDL::Graphics::TriD::VRML to generate VRML output.
Currently, this is probably not much more than a POP (proof of
principle) but is hoped to be useful enough for some real life work.
Check PDL::PP for the format of the signature. Currently, the "[t]"
qualifier and all type qualifiers are ignored.
PDL::thread
Use explicit threading over specified dimensions (see also
PDL::Indexing)
$b = $a->thread($dim,[$dim1,...])
$a = zeroes 3,4,5;
$b = $a->thread(2,0);
Same as PDL::thread1, i.e. uses thread id 1.
diagonal
Returns the multidimensional diagonal over the specified dimensions.
$d = $x->diagonal(dim1, dim2,...)
perldl> $a = zeroes(3,3,3);
perldl> ($b = $a->diagonal(0,1))++;
perldl> p $a
[
[
[1 0 0]
[0 1 0]
[0 0 1]
]
[
[1 0 0]
[0 1 0]
[0 0 1]
]
[
[1 0 0]
[0 1 0]
[0 0 1]
]
]
PDL::thread1
Explicit threading over specified dims using thread id 1.
$xx = $x->thread1(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
PDL::thread2
Explicit threading over specified dims using thread id 2.
$xx = $x->thread2(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
PDL::thread3
Explicit threading over specified dims using thread id 3.
$xx = $x->thread3(3,1)
Wibble
Convenience function interfacing to PDL::Slices::threadI.
sever
sever any links of this piddle to parent piddles
In PDL it is possible for a piddle to be just another view into another
piddle's data. In that case we call this piddle a virtual piddle and
the original piddle owning the data its parent. In other languages
these alternate views sometimes run by names such as alias or smart
reference.
Typical functions that return such piddles are "slice", "xchg",
"index", etc. Sometimes, however, you would like to separate the
virtual piddle from its parent's data and just give it a life of its
own (so that manipulation of its data doesn't change the parent). This
is simply achieved by using "sever". For example,
$a = $pdl->index(pdl(0,3,7))->sever;
$a++; # important: $pdl is not modified!
In many (but not all) circumstances it acts therefore similar to copy.
However, in general performance is better with "sever" and secondly,
"sever" doesn't lead to futile copying when used on piddles that
already have their own data. On the other hand, if you really want to
make sure to work on a copy of a piddle use copy.
$a = zeroes(20);
$a->sever; # NOOP since $a is already its own boss!
Again note: "sever" is not the same as copy! For example,
$a = zeroes(1); # $a does not have a parent, i.e. it is not a slice etc
$b = $a->sever; # $b is now pointing to the same piddle as $a
$b++;
print $a;
[1]
but
$a = zeroes(1);
$b = $a->copy; # $b is now pointing to a new piddle
$b++;
print $a;
[0]
PDL::info
Return formatted information about a piddle.
$x->info($format_string);
print $x->info("Type: %T Dim: %-15D State: %S");
Returns a string with info about a piddle. Takes an optional argument
to specify the format of information a la sprintf. Format specifiers
are in the form "%<width><letter>" where the width is optional and the
letter is one of
T Type
D Formatted Dimensions
F Dataflow status
S Some internal flags (P=physical,V=Vaffine,C=changed)
C Class of this piddle, i.e. "ref $pdl"
A Address of the piddle struct as a unique identifier
M Calculated memory consumption of this piddle's data area
approx
test for approximately equal values (relaxed "==")
# ok if all corresponding values in
# piddles are within 1e-8 of each other
print "ok\n" if all approx $a, $b, 1e-8;
"approx" is a relaxed form of the "==" operator and often more
appropriate for floating point types ("float" and "double").
Usage:
$res = approx $a, $b [, $eps]
The optional parameter $eps is remembered across invocations and
initially set to 1e-6, e.g.
approx $a, $b; # last $eps used (1e-6 initially)
approx $a, $b, 1e-10; # 1e-10
approx $a, $b; # also 1e-10
mslice
Convenience interface to slice, allowing easier inclusion of dimensions
in perl code.
$a = $x->mslice(...);
# below is the same as $x->slice("5:7,:,3:4:2")
$a = $x->mslice([5,7],X,[3,4,2]);
nslice
Internally used interface to slice and dice that is the runtime part of
the PDL::NiceSlice implementation.
$a = $x->nslice(...);
# below is the same as $x->slice("5:7,:,3:4:2")
$a = $x->nslice([5,7],X,[3,4,2]);
It implements a superset of mslice's features. Should probably not be
used in your scripts. Rather resort to the PDL::NiceSlice interface.
inplace
Flag a piddle so that the next operation is done 'in place'
somefunc($x->inplace); somefunc(inplace $x);
In most cases one likes to use the syntax "$y = f($x)", however in many
case the operation "f()" can be done correctly 'in place', i.e. without
making a new copy of the data for output. To make it easy to use this,
we write "f()" in such a way that it operates in-place, and use
"inplace" to hint that a new copy should be disabled. This also makes
for clear syntax.
Obviously this will not work for all functions, and if in doubt see the
function's documentation. However one can assume this is true for all
elemental functions (i.e. those which just operate array element by
array element like "log10").
perldl> $x = xvals zeroes 10;
perldl> log10(inplace $x)
perldl> p $x
[ -Inf 0 0.30103 0.47712125 0.60205999 0.69897
0.77815125 0.84509804 0.90308999 0.95424251]
is_inplace
Test the in-place flag on a piddle
$out = ($in->is_inplace) ? $in : zeroes($in);
$in->set_inplace(0)
Provides access to the inplace hint flag, within the perl millieu.
That way functions you write can be inplace aware... If given an
argument the inplace flag will be set or unset depending on the value
at the same time. Can be used for shortcut tests that delete the
inplace flag while testing:
$out = ($in->is_inplace(0)) ? $in : zeroes($in); # test & unset!
set_inplace
Set the in-place flag on a piddle
$out = ($in->is_inplace) ? $in : zeroes($in);
$in->set_inplace(0);
Provides access to the inplace hint flag, within the perl millieu.
Useful mainly for turning it OFF, as inplace turns it ON more
conveniently.
new_or_inplace
Return back either the argument pdl or a copy of it depending on
whether it be flagged in-place or no. Handy for building inplace-aware
functions.
PDL::new_from_specification
Internal method: create piddle by specification
This is the argument processing method called by zeroes and some other
functions which constructs piddles from argument lists of the form:
[type], $nx, $ny, $nz,...
For $nx, $ny, etc. 0 and 1D piddles are allowed. Giving those has the
same effect as if saying "$arg->list", e.g.
1, pdl(5,2), 4
is equivalent to
1, 5, 2, 4
Note, however, that in all functions using "new_from_specification"
calling "func $piddle" will probably not do what you want. So to play
safe use (e.g. with zeroes)
$pdl = zeroes $dimpdl->list;
Calling
$pdl = zeroes $dimpdl;
will rather be equivalent to
$pdl = zeroes $dimpdl->dims;
However,
$pdl = zeroes ushort, $dimpdl;
will again do what you intended since it is interpreted as if you had
said
$pdl = zeroes ushort, $dimpdl->list;
This is unfortunate and confusing but no good solution seems obvious
that would not break existing scripts.
isempty
Test whether a piddle is empty
print "The piddle has zero dimension\n" if $pdl->isempty;
This function returns 1 if the piddle has zero elements. This is useful
in particular when using the indexing function which. In the case of no
match to a specified criterion, the returned piddle has zero dimension.
perldl> $a=sequence(10)
perldl> $i=which($a < -1)
perldl> print "I found no matches!\n" if ($a->isempty);
Note that having zero elements is rather different from the concept of
being a null piddle, see the PDL::FAQ and PDL::Indexing manpages for
discussions of this.
zeroes
construct a zero filled piddle from dimension list or template piddle.
Various forms of usage,
(i) by specification or (ii) by template piddle:
# usage type (i):
$a = zeroes([type], $nx, $ny, $nz,...);
$a = PDL->zeroes([type], $nx, $ny, $nz,...);
$a = $pdl->zeroes([type], $nx, $ny, $nz,...);
# usage type (ii):
$a = zeroes $b;
$a = $b->zeroes
zeroes inplace $a; # Equivalent to $a .= 0;
$a->inplace->zeroes; # ""
perldl> $z = zeroes 4,3
perldl> p $z
[
[0 0 0 0]
[0 0 0 0]
[0 0 0 0]
]
perldl> $z = zeroes ushort, 3,2 # Create ushort array
[ushort() etc. with no arg returns a PDL::Types token]
See also new_from_specification for details on using piddles in the
dimensions list.
ones
construct a one filled piddle
$a = ones([type], $nx, $ny, $nz,...);
etc. (see 'zeroes')
see zeroes() and add one
See also new_from_specification for details on using piddles in the
dimensions list.
reshape
Change the shape (i.e. dimensions) of a piddle, preserving contents.
$x->reshape(NEWDIMS); reshape($x, NEWDIMS);
The data elements are preserved, obviously they will wrap differently
and get truncated if the new array is shorter. If the new array is
longer it will be zero-padded.
***Potential incompatibility with earlier versions of PDL**** If the
list of "NEWDIMS" is empty "reshape" will just drop all dimensions of
size 1 (preserving the number of elements):
$a = sequence(3,4,5);
$b = $a(1,3);
$b->reshape();
print $b->info;
PDL: Double D [5]
Dimensions of size 1 will also be dropped if "reshape" is invoked with
the argument -1:
$b = $a->reshape(-1);
As opposed to "reshape" without arguments, "reshape(-1)" preserves
dataflow:
$a = ones(2,1,2);
$b = $a(0)->reshape(-1);
$b++;
print $a;
[
[
[2 1]
]
[
[2 1]
]
]
Note: an explicit copy of slices is generally forced - this is the only
way (for now) of stopping a crash if $x is a slice. Important:
Physical piddles are changed inplace!
perldl> $x = sequence(10)
perldl> reshape $x,3,4; p $x
[
[0 1 2]
[3 4 5]
[6 7 8]
[9 0 0]
]
perldl> reshape $x,5; p $x
[0 1 2 3 4]
squeeze
eliminate all singleton dimensions (dims of size 1)
$b = $a(0,0)->squeeze;
Alias for "reshape(-1)". Removes all singleton dimensions and preserves
dataflow. A more concise interface is provided by PDL::NiceSlice via
modifiers:
use PDL::NiceSlice;
$b = $a(0,0;-); # same as $a(0,0)->squeeze
flat
flatten a piddle (alias for "$pdl-"clump(-1)>)
$srt = $pdl->flat->qsort;
Useful method to make a 1D piddle from an arbitrarily sized input
piddle. Data flows back and forth as usual with slicing routines.
Falls through if argument already <= 1D.
convert
Generic datatype conversion function
$y = convert($x, $newtype);
$y = convert $x, long
$y = convert $x, ushort
$newtype is a type number, for convenience they are returned by
"long()" etc when called without arguments.
Datatype_conversions
byte|short|ushort|long|longlong|float|double convert shorthands
$y = double $x; $y = ushort [1..10];
# all of byte|short|ushort|long|float|double behave similarly
When called with a piddle argument, they convert to the specific
datatype.
When called with a numeric or list / listref argument they construct a
new piddle. This is a convenience to avoid having to be long-winded and
say "$x = long(pdl(42))"
Thus one can say:
$a = float(1,2,3,4); # 1D
$a = float([1,2,3],[4,5,6]); # 2D
$a = float([[1,2,3],[4,5,6]]); # 2D
Note the last two are equivalent - a list is automatically converted to
a list reference for syntactic convenience. i.e. you can omit the outer
"[]"
When called with no arguments return a special type token. This allows
syntactical sugar like:
$x = ones byte, 1000,1000;
This example creates a large piddle directly as byte datatype in order
to save memory.
In order to control how undefs are handled in converting from perl
lists to PDLs, one can set the variable $PDL::undefval; see the
function pdl() for more details.
perldl> p $x=sqrt float [1..10]
[1 1.41421 1.73205 2 2.23607 2.44949 2.64575 2.82843 3 3.16228]
perldl> p byte $x
[1 1 1 2 2 2 2 2 3 3]
byte
Convert to byte datatype - see 'Datatype_conversions'
short
Convert to short datatype - see 'Datatype_conversions'
ushort
Convert to ushort datatype - see 'Datatype_conversions'
long
Convert to long datatype - see 'Datatype_conversions'
longlong
Convert to longlong datatype - see 'Datatype_conversions'
float
Convert to float datatype - see 'Datatype_conversions'
double
Convert to double datatype - see 'Datatype_conversions'
type
return the type of a piddle as a blessed type object
A convenience function for use with the piddle constructors, e.g.
$b = PDL->zeroes($a->type,$a->dims,3);
die "must be float" unless $a->type == float;
See also the discussion of the "PDL::Type" class in PDL::Types. Note
that the "PDL::Type" objects have overloaded comparison and stringify
operators so that you can compare and print types:
$a = $a->float if $a->type < float;
$t = $a->type; print "Type is $t\";
list
Convert piddle to perl list
@tmp = list $x;
Obviously this is grossly inefficient for the large datasets PDL is
designed to handle. This was provided as a get out while PDL matured.
It should now be mostly superseded by superior constructs, such as
PP/threading. However it is still occasionally useful and is provied
for backwards compatibility.
for (list $x) {
# Do something on each value...
}
listindices
Convert piddle indices to perl list
@tmp = listindices $x;
@tmp now contains the values "0..nelem($x)".
Obviously this is grossly inefficient for the large datasets PDL is
designed to handle. This was provided as a get out while PDL matured.
It should now be mostly superseded by superior constructs, such as
PP/threading. However it is still occasionally useful and is provied
for backwards compatibility.
for $i (listindices $x) {
# Do something on each value...
}
set
Set a single value inside a piddle
set $piddle, @position, $value
@position is a coordinate list, of size equal to the number of
dimensions in the piddle. Occasionally useful, mainly provided for
backwards compatibility as superseded by use of slice and assigment
operator ".=".
perldl> $x = sequence 3,4
perldl> set $x, 2,1,99
perldl> p $x
[
[ 0 1 2]
[ 3 4 99]
[ 6 7 8]
[ 9 10 11]
]
at
Returns a single value inside a piddle as perl scalar.
$z = at($piddle, @position); $z=$piddle->at(@position);
@position is a coordinate list, of size equal to the number of
dimensions in the piddle. Occasionally useful in a general context,
quite useful too inside PDL internals.
perldl> $x = sequence 3,4
perldl> p $x->at(1,2)
7
sclr
return a single value from a piddle as a scalar
$val = $a(10)->sclr;
$val = sclr inner($a,$b);
The "sclr" method is useful to turn a piddle into a normal Perl scalar.
Its main advantage over using "at" for this purpose is the fact that
you do not need to worry if the piddle is 0D, 1D or higher dimensional.
Using "at" you have to supply the correct number of zeroes, e.g.
$a = sequence(10);
$b = $a->slice('4');
print $b->sclr; # no problem
print $b->at(); # error: needs at least one zero
"sclr" is generally used when a Perl scalar is required instead of a
one-element piddle. If the input is a multielement piddle the first
value is returned as a Perl scalar. You can optionally switch on checks
to ensure that the input piddle has only one element:
PDL->sclr({Check => 'warn'}); # carp if called with multi-el pdls
PDL->sclr({Check => 'barf'}); # croak if called with multi-el pdls
are the commands to switch on warnings or raise an error if a
multielement piddle is passed as input. Note that these options can
only be set when "sclr" is called as a class method (see example
above). Use
PDL->sclr({Check=>0});
to switch these checks off again (default setting); When called as a
class method the resulting check mode is returned (0: no checking, 1:
warn, 2: barf).
cat
concatentate piddles to N+1 dimensional piddle
Takes a list of N piddles of same shape as argument, returns a single
piddle of dimension N+1
perldl> $x = cat ones(3,3),zeroes(3,3),rvals(3,3); p $x
[
[
[1 1 1]
[1 1 1]
[1 1 1]
]
[
[0 0 0]
[0 0 0]
[0 0 0]
]
[
[1 1 1]
[1 0 1]
[1 1 1]
]
]
dog
Opposite of 'cat' :). Split N dim piddle to list of N-1 dim piddles
Takes a single N-dimensional piddle and splits it into a list of N-1
dimensional piddles. The breakup is done along the last dimension.
Note the dataflown connection is still preserved by default, e.g.:
perldl> $p = ones 3,3,3
perldl> ($a,$b,$c) = dog $p
perldl> $b++; p $p
[
[
[1 1 1]
[1 1 1]
[1 1 1]
]
[
[2 2 2]
[2 2 2]
[2 2 2]
]
[
[1 1 1]
[1 1 1]
[1 1 1]
]
]
Break => 1 Break dataflow connection (new copy)
barf
Standard error reporting routine for PDL.
"barf()" is the routine PDL modules should call to report errors. This
is because "barf()" will report the error as coming from the correct
line in the module user's script rather than in the PDL module.
It does this magic by unwinding the stack frames until it reaches a
package NOT beginning with "PDL::". If you DO want it to report errors
in some module PDL::Foo (e.g. when debugging PDL::Foo) then set the
variable "$PDL::Foo::Debugging=1".
Additionally if you set the variable "$PDL::Debugging=1" you will get a
COMPLETE stack trace back up to the top level package.
Finally "barf()" will try and report usage information from the PDL
documentation database if the error message is of the form 'Usage:
func'.
Remember "barf()" is your friend. *Use* it!
At the perl level:
barf("User has too low an IQ!");
In C or XS code:
barf("You have made %d errors", count);
Note: this is one of the few functions ALWAYS exported by PDL::Core
gethdr
Retrieve header information from a piddle
$pdl=rfits('file.fits');
$h=$pdl->gethdr;
print "Number of pixels in the X-direction=$$h{NAXIS1}\n";
The "gethdr" function retrieves whatever header information is
contained within a piddle. The header can be set with sethdr and is
always a hash reference or undef.
"gethdr" returns undef if the piddle has not yet had a header defined;
compare with "hdr" and "fhdr", which are guaranteed to return a defined
value.
Note that gethdr() works by reference: you can modify the header in-
place once it has been retrieved:
$a = rfits($filename);
$ah = $a->gethdr();
$ah->{FILENAME} = $filename;
It is also important to realise that in most cases the header is not
automatically copied when you copy the piddle. See hdrcpy to enable
automatic header copying.
Here's another example: a wrapper around rcols that allows your piddle
to remember the file it was read from and the columns could be easily
written (here assuming that no regexp is needed, extensions are left as
an exercise for the reader)
sub ext_rcols {
my ($file, @columns)=@_;
my $header={};
$$header{File}=$file;
$$header{Columns}=\@columns;
@piddles=rcols $file, @columns;
foreach (@piddles) { $_->sethdr($header); }
return @piddles;
}
hdr
Retrieve or set header information from a piddle
$pdl->hdr->{CDELT1} = 1;
The "hdr" function allows convenient access to the header of a piddle.
Unlike "gethdr" it is guaranteed to return a defined value, so you can
use it in a hash dereference as in the example. If the header does not
yet exist, it gets autogenerated as an empty hash.
Note that this is usually -- but not always -- What You Want. If you
want to use a tied Astro::FITS::Header hash, for example, you should
either construct it yourself and use "sethdr" to put it into the
piddle, or use fhdr instead. (Note that you should be able to write
out the FITS file successfully regardless of whether your PDL has a
tied FITS header object or a vanilla hash).
fhdr
Retrieve or set FITS header information from a piddle
$pdl->fhdr->{CDELT1} = 1;
The "fhdr" function allows convenient access to the header of a piddle.
Unlike "gethdr" it is guaranteed to return a defined value, so you can
use it in a hash dereference as in the example. If the header does not
yet exist, it gets autogenerated as a tied Astro::FITS::Header hash.
Astro::FITS::Header tied hashes are better at matching the behavior of
FITS headers than are regular hashes. In particular, the hash keys are
CAsE INsEnSItiVE, unlike normal hash keys. See Astro::FITS::Header for
details.
If you do not have Astro::FITS::Header installed, you get back a normal
hash instead of a tied object.
sethdr
Set header information of a piddle
$pdl = zeroes(100,100);
$h = {NAXIS=>2, NAXIS1=>100, NAXIS=>100, COMMENT=>"Sample FITS-style header"};
# add a FILENAME field to the header
$$h{FILENAME} = 'file.fits';
$pdl->sethdr( $h );
The "sethdr" function sets the header information for a piddle. You
must feed in a hash ref or undef, and the header field of the PDL is
set to be a new ref to the same hash (or undefined).
The hash ref requirement is a speed bump put in place since the normal
use of headers is to store fits header information and the like. Of
course, if you want you can hang whatever ugly old data structure you
want off of the header, but that makes life more complex.
Remember that the hash is not copied -- the header is made into a ref
that points to the same underlying data. To get a real copy without
making any assumptions about the underlying data structure, you can use
one of the following:
use PDL::IO::Dumper;
$pdl->sethdr( deep_copy($h) );
(which is slow but general), or
$pdl->sethdr( PDL::_hdr_copy($h) )
(which uses the built-in sleazy deep copier), or (if you know that all
the elements happen to be scalars):
{ my %a = %$h;
$pdl->sethdr(\%a);
}
which is considerably faster but just copies the top level.
The "sethdr" function must be given a hash reference or undef. For
further information on the header, see gethdr, hdr, fhdr and hdrcpy.
hdrcpy
switch on/off/examine automatic header copying
print "hdrs will be copied" if $a->hdrcpy;
$a->hdrcpy(1); # switch on automatic header copying
$b = $a->sumover; # and $b will inherit $a's hdr
$a->hdrcpy(0); # and now make $a non-infectious again
"hdrcpy" without an argument just returns the current setting of the
flag. See also "hcpy" which returns its PDL argument (and so is useful
in method-call pipelines).
Normally, the optional header of a piddle is not copied automatically
in pdl operations. Switching on the hdrcpy flag using the "hdrcpy"
method will enable automatic hdr copying. Note that an actual deep copy
gets made, which is rather processor-inefficient -- so avoid using
header copying in tight loops!
Most PDLs have the "hdrcpy" flag cleared by default; however, some
routines (notably rfits) set it by default where that makes more sense.
The "hdrcpy" flag is viral: if you set it for a PDL, then derived PDLs
will get copies of the header and will also have their "hdrcpy" flags
set. For example:
$a = xvals(50,50);
$a->hdrcpy(1);
$a->hdr->{FOO} = "bar";
$b = $a++;
$c = $b++;
print $b->hdr->{FOO}, " - ", $c->hdr->{FOO}, "\n";
$b->hdr->{FOO} = "baz";
print $a->hdr->{FOO}, " - ", $b->hdr->{FOO}, " - ", $c->hdr->{FOO}, "\n";
will print:
bar - bar
bar - baz - bar
hcpy
Switch on/off automatic header copying, with PDL pass-through
$a = rfits('foo.fits')->hcpy(0);
$a = rfits('foo.fits')->hcpy(1);
"hcpy" sets or clears the hdrcpy flag of a PDL, and returns the PDL
itself. That makes it convenient for inline use in expressions.
AUTHOR
Copyright (C) Karl Glazebrook (kgb@aaoepp.aao.gov.au), Tuomas J. Lukka,
(lukka@husc.harvard.edu) and Christian Soeller
(c.soeller@auckland.ac.nz) 1997. Modified, Craig DeForest
(deforest@boulder.swri.edu) 2002. All rights reserved. There is no
warranty. You are allowed to redistribute this software / documentation
under certain conditions. For details, see the file COPYING in the PDL
distribution. If this file is separated from the PDL distribution, the
copyright notice should be included in the file.
perl v5.10.0 2008-08-29 Core(3)
